Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015869291.1_cds_XP_016433700.1_29832
CDS Infomation

[gene=LOC107760201] [db_xref=GeneID:107760201] [protein=eukaryotic translation initiation factor 3 subunit A-like] [partial=3'] [protein_id=XP_016433700.1] [location=complement(join(<10..81,162..383,1300..1461,1590..1817,2039..2068,2164..2532,2619..2834,3340..3821,4103..4148))] [gbkey=CDS]
Sequence

ATGGCGACTTTTGCCAAACCTGAGAATGCTTTGAAGCGTGCTGAAGAGTTGATTACTGTT
GGACAAAAGCAAGAAGCGCTGCAAGCACTTCATGATCTTATTACTTCAAGGAGGTATAGA
GCATGGCAAAAAACTCTTGAAAGGATAATGTTCAAGTATGTAGAGCTATGTGTTGACATG
AGAAGGGGGAGGTTTGCCAAGGATGGCCTAATTCAATATCGTATAGTCTGTCAGCAAGTG
AACATTAACTCCTTAGAGGAGGTGATAAAGCATTTCATGCATTTAGCTACTGAGCGAGCT
GAACTGGCTCGCAATCAAGCACAGGCGTTGGAGGAAGCTCTGGATGTGGAGGACTTGGAA
GCTGATAAAAGGCCTGAAGATCTTATGTTGAGTTATGTTAGTGGGGAGAAAGGAAAAGAT
AGATCTGATCGCGAGCTTGTCACTCCCTGGTTTAAGTTTTTGTGGGAGACATATAGAACT
GTTCTGGAGATCTTGCGTAACAACTCAAGATTGGAGGCTCTGTATGCCATGACAGCACAC
CGAGCCTTTCAGTTCTGTAAGCAGTACAAACGTACAACAGAATTTCGTCGTCTTTGTGAA
ATCATCCGGAATCATTTGGCAAATCTCAACAAGTATAGAGATCAGAGGGACCGGCCTGAT
CTGTCTGCTCCAGAGAGCCTGCAATTGTATCTAGACACTAGATTTGAACAACTGAAAGTT
GCTACCGAACTGGGTCTTTGGCAGGAAGCTTTCCGTTCCATAGAAGACATATATGGATTG
ATGTGCATGGTTAAGAAAACCCCCAAGGCGTCATTGATGGTTGTTTACTATGGGAAGCTT
ACTGAGATATTTTGGATGTCATCAAATCATCTTTATCATGCTTATGCATGGCTCAAGCTT
TTCTCTCTTCAGAAGAGTTTTAATAAAAATTTAAGCCAGAAGGATTTGCAGTTAATAGCA
TCGTCTGTTGTCCTAGCTGCACTTTCTGTGCCTCCTTATGATCAGTCGTATGGTGCATCT
CATCTTGAGCTTGAAAATGAGAAGGAGAGGAGTTTGAGGGTGGCCAATCTAATAGGTTTT
GAAGTTGAACCCAAAGCCGAAAACAGAGTAGCGCTCTCCCGATCATCACTTCTTTCAGAG
TTGGTGTCCAAAGGTGTGATGTCTTGTGTCACCCAAGAAGTGAAAGATCTTTATCATCTG
TTAGAAAATGAGTTTCTTCCTTTGGATCTGGCACTGAAGGTGCAGCCCGTATTGAGCAAA
ATATCAAAGCTTGGCGGTAAGCTGTCTTCAGTTTCCTCAGTTCCTGAAGTACAACTGTCT
CAGTATGTTCCTGCCTTGGAAAAACTTGCTACTCTGAGGTTGCTCCAGCAGGTCTCTCAG
GTGTATCAGACAATTCAGATTGATAACATATCTAAGATGATCCCATTCTTTGACTTCACT
GTTATTGAGAAGATATCAGTTGATGCGGTTAGACGTAATTTTCTAGCTATCAAAGTTGAT
CACATGAAGGGCGCTGTCTTCTTTGGTAAACAGAGTATTGAGGCGGAAGGACTCCGGGAT
CATCTGTCTCTTTTGGCTGAATCCCTTAGCAAGGCAAGGACAATGATTTATCCCCCAGCA
AAGAAGGCTGCCAAGCTTGGGGAAGCACTGTCTAATTTAGCGGAGATAGTGGAGAAGGAG
CACAAGAGACTTCTTGCCCGGAAGTCCATTATTGAGAAACGCAAAGAGGAGCAAGAGCGT
TTACTCTTAGAAATGGAACGAGTGGAGGAAACAAAGAGGCGAGAGCTACAAAAGATGACT
GAAGAGGCTGAGCAAAAGCGCATTGCT

Peptide Sequence

PEP ID

XP_016433700.1
PEP Infomation

PREDICTED: eukaryotic translation initiation factor 3 subunit A-like, partial [Nicotiana tabacum]
Sequence

MATFAKPENALKRAEELITVGQKQEALQALHDLITSRRYRAWQKTLERIMFKYVELCVDM
RRGRFAKDGLIQYRIVCQQVNINSLEEVIKHFMHLATERAELARNQAQALEEALDVEDLE
ADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSRLEALYAMTAH
RAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKV
ATELGLWQEAFRSIEDIYGLMCMVKKTPKASLMVVYYGKLTEIFWMSSNHLYHAYAWLKL
FSLQKSFNKNLSQKDLQLIASSVVLAALSVPPYDQSYGASHLELENEKERSLRVANLIGF
EVEPKAENRVALSRSSLLSELVSKGVMSCVTQEVKDLYHLLENEFLPLDLALKVQPVLSK
ISKLGGKLSSVSSVPEVQLSQYVPALEKLATLRLLQQVSQVYQTIQIDNISKMIPFFDFT
VIEKISVDAVRRNFLAIKVDHMKGAVFFGKQSIEAEGLRDHLSLLAESLSKARTMIYPPA
KKAAKLGEALSNLAEIVEKEHKRLLARKSIIEKRKEEQERLLLEMERVEETKRRELQKMT
EEAEQKRIA

Transcript Sequence

Gene sequence data has not been registered.